Placeholder Image

Subtitles section Play video

  • >> Yes, so as you may have noticed this is

  • from your homework, and I want to do this

  • as a demonstration regardless

  • of whether you've already solved this problem.

  • In fact, I hope that you've solved this problem

  • because what I'd like you to do is to be able

  • to think really deeply about it, and show you my perspective

  • on structure solving and in particular we're going

  • to be talking about using HMBC as a very focused tool

  • to help solve structures and specifically for the problem

  • of putting the pieces together.

  • You've seen on the templates that I've given you,

  • I've had this tremendous emphasis, or at least I've tried

  • to have this tremendous emphasis on thinking your way

  • through the problem, reading the spectrum, getting the formula,

  • writing out fragments, jotting down what you know,

  • jotting down what you don't know if possible, and then being able

  • to ask focused questions.

  • HMBC is an incredibly data rich technique,

  • it also has ambiguities to it because we get two bond

  • and three bond couplings.

  • So you've got a huge amount of information, a huge amount

  • of data and what I'd like us to do today is to learn how

  • to use it as a focus tool.

  • So I want to zip through the problem from Silverstein

  • at the beginning and then focus on the HMBC angle.

  • So this is problem 8.43 from Silverstein, and I want to jot

  • down my -- you know I've worked this problem,

  • just like you folks, and I want to jot down my impressions

  • on working the problem.

  • So I look at this problem and I generally start with --

  • I have -- I mean what's the most useful thing you can get?

  • Molecular formula and functional group.

  • That's sort of the most general stuff, and we'll be able

  • to get molecular formula in just a moment

  • because we'll actually see all the hydrogens

  • and all the carbons so we basically will get them,

  • get the oxygen's by difference.

  • So before we start with the NMR spectra though,

  • looking at the IR spectrum, I see what looks like an OH group,

  • I see what looks like a carbonyl.

  • At 1728, it's a little high for a typical ketone, right.

  • A typical ketone is a little but lower, it might be an ester.

  • I've been emphasizing it's very hard, in any sort of level

  • of complexity, to get CO single bonds stretches associated

  • with esters.

  • It's probably hiding right here at 1188.

  • You sort of get a hint at it, but we'll see in a moment,

  • there's some other hints there pointing--

  • pointing towards ester.

  • We probably have an alkene -- that's probably an alkene CH,

  • it could be an aromatic, we'll see in a moment it's not.

  • That's probably an alkene CC bond.

  • All right, mass spec it's 200 molecular weight

  • in the EI mass spectrum.

  • What I'm going to do before we --

  • before we actually get the formulas,

  • so maybe at this point I'll just jot down sort of a question mark

  • on the IR spectrum -- ester is sort of my thinking on this.

  • All right, at this point I want to go and look

  • at the proton NMR, look at the carbon NMR, and I've really,

  • really, really been emphasizing this notion

  • of keeping the resonances separate from the atoms.

  • In other words, we know resonance is something you can

  • see, we're going to be assigning those resonances

  • to the structure as we build the structure,

  • and so we have a common language, I go ahead

  • and I simply letter the peaks A, B, C --

  • it's hard staring into the light -- D, E, F, G, H, I, J,

  • and we number the carbon resonances, and I'll go 1, 2,

  • 3 -- that's our chloroform -- 4, 5, 6, 7, 8, 9, 10, 11.

  • I like to do a good job of working the integrals.

  • My philosophy, every particular integral has experimental errors

  • associated with it.

  • The best way that you can do it if you know the number

  • of hydrogens in the molecule or you know multiple hydrogens,

  • is add up a bunch and divide by the number of hydrogens.

  • If you don't or you're in a hurry, often you can get it

  • by dissection with a ruler.

  • These integrals are a little hard to read,

  • they're starting right in the baseline; they're not offset.

  • You can use a ruler and draw straight lines,

  • you can slap a grid on it.

  • I'm just using my ever, ever useful grid, and if I'm looking,

  • I start to see a ratio that's just a hair under 6,

  • a hair under 6, a hair under 3, hair under 3, hair under 3.

  • This one's just a little bit --

  • actually this just a hair under 6, hair under 9,

  • so basically we're talking about like 2 point --

  • 2.8 units, these happen to be tenths of an inch per hydrogen.

  • This guy is interesting, he's coming up a little bit,

  • this one right at 1.6 ppm, so he's coming up over .6,

  • and I'll tell you about that in a second,

  • and then we see one that's just a hair under .9,

  • and another that's just a hair under .9.

  • So you pretty much, by inspection, can go ahead

  • and get -- and again it's really hard staring in here --

  • 2H for A, 2H for B, 1H for C, 1H for D, 1H for E, 1H for F.

  • [ Inaudible ]

  • 2H for F, thank you, 3H for G. Now H is interesting, 1.6 --

  • this is in chloroform solution, and chloroform,

  • water typically shows up at about 1.6 parts per million,

  • and so you can kind of see the water peak right over here.

  • So you have this multiplate that's reasonably symmetrical,

  • and then you'll have a little bit

  • of water off on this side here.

  • I would go in if I were at my own spectrometer --

  • I'd go in, and zoom in and get a better look and see,

  • but I think you can see the integral just gives a little

  • extra kick up for the water.

  • So H is 2H, I is 3 -- 3H, J is 3H.

  • So in other words, our molecular formula has a total

  • of H20 in it.

  • Now it's certainly possible, if I had an amine or something,

  • that the amine NH would not show up or an alcohol NH.

  • So I'm not immediately locking it in,

  • and this is really important,

  • you have to be keeping your wits about you.

  • Secondary amine NH is aliphatic.

  • Secondary NH's are terribly hard to see.

  • Alcohols can be broad.

  • Alcohols can be with the water peak.

  • Carboxylic acids can be broad as well, and can be disappeared,

  • particularly if you're in chloroform

  • versus DMSO due to exchange.

  • If we look at the carbon NMR here, peak number one is

  • at about 170, just a hair down of 170, about 173 ppm

  • where you would expect for an ester,

  • not where you'd expect for a ketone.

  • We've got a couple of peaks over here, if I want to go ahead

  • at this point, I'll say, one is a quat, two is a quat,

  • looking at the depth, three is a CH2, four is a quat,

  • five is a CH2, six is a CH2, seven and eight are all CH2's,

  • and then nine, 10, and 11 are all CH3's.

  • So basically if we do this, we see we have C11H20.

  • If we have symmetry in a molecule, which you've gotten

  • in a couple of homework problems this week,

  • of course you might end up with a count that's lower,

  • if your carbons aren't all different,

  • or you could have overlapping peaks,

  • but symmetry's a typical reason.

  • If you have a plain phenyl group, you're going

  • to see four carbon peaks, but you're going to get six carbons.

  • If you have a ring like a cycle propane ring,

  • and there's no stereo center in the molecule,

  • you may if you have one point of attachment have two methylene's

  • that are the same, but if I look here, I'm suspecting an alcohol,

  • I'm suspecting an ester.

  • I have 200, if I take away C12, C11,

  • and H20 from that, I get O3.

  • So I'm reasonably happy at this point,

  • I think I have a molecular formula.

  • Now, the next thing I do

  • with the molecular formula is I'll start to --

  • it's nice to have a scorecard here, so I might, for example,

  • over here, jot down some thoughts; ester, alcohol,

  • alkene as some of the group that we're seeing in the molecule.

  • If I want, I can calculate degrees of unsaturation,

  • another very useful thing.

  • Remember, I don't do it by formula,

  • I just say, C11would be H24.

  • I'm at H20 so we have two degrees of unsaturation.

  • So I can help keep my wits about me.

  • That also tells me if I have a carbonyl,

  • and I have an alkene I know I have no rings in the molecule.

  • All right, now the next place --

  • any questions or thoughts at this point?

  • >> So it doesn't matter [inaudible]?

  • >> Does it?

  • Let's see.

  • >> Maybe I'm doing my math -- I'm doing my math wrong.

  • >> And this is actually a good point in checking yourself.

  • I have an incredible ability to screw up arithmetic on my feet

  • which means go ahead and double check yours.

  • >> I think you're actually right I calculated the formulas wrong.

  • >> All right.

  • >> [Inaudible] C could and D would be the OH.

  • So we've got some interesting points here you can already see.

  • So if you're reasonably experienced,

  • I'm going to bet anything

  • that we have a stereo center in the molecule.

  • Now, even though I haven't measured the coupling constants,

  • I could measure the coupling constants,

  • they very conveniently give me a scale here

  • and you get a peak print out, but very conveniently,

  • a typical aliphatic CH coupling constant is about 7 hertz.

  • A methyl group next to a methylene is really very typical

  • for this, you'll -- a methyl group next to just

  • about anything is going to give you about 7 hertz.

  • So immediately if I'm eye-balling this,

  • even if I don't know I'm at 600 megahertz,

  • and I see this triplet here that's obviously a CH3 next

  • to a CH3 next to a CH2.

  • In fact I can write this as one of my fragments here

  • because I think we're pretty obvious at that point for this

  • and this here, but if I'm looking at that, I see okay,

  • these guys are leaning into each other, we have an AB pattern,

  • it's obviously a big coupling constant.

  • This separation is at least twice the separation

  • in the triplet, so it's like a 14 hertz

  • or 15 hertz coupling constant.

  • That is very typical for a germinal coupling.

  • So in the back of my mind I'm thinking stereo center,

  • something with the methylene that's diastereotpic.

  • If I have a stereo center, every methylene

  • in the molecule is going to be diastereotopic,

  • but usually the ones that are further

  • from the stereo center behave as if things are coincident.

  • So we look here, we have what looks like an ethyl group,

  • it wouldn't have surprised me

  • to see a more complicated coupling pattern

  • for this ethyl group, but it doesn't necessarily surprise me

  • to see a less coupling constant.

  • I'm pretty [inaudible] less complicated coupling pattern

  • just to see a plain old quartet.

  • I'm pretty certain I have an ethyl ester at this point.

  • Pretty confident I have an ethyl ester because that sure looks

  • like an OCH2CH3 off of an ethyl ester,

  • but it could be something else that's shifting it downfield.

  • All right, at this point it's time to get analytical,

  • and where I'd like to go next is actually the HMQC rather

  • than the COZ.

  • As I was saying in discussion the other day,

  • the problem is you're drowning in data in the COZ quite often,

  • and a lot of the data isn't particularly useful.

  • You'll have two diastereotopic protons, and they'll both couple

  • to another two diastereotopic protons or even to one proton,

  • and you're getting more information than you need

  • because you'll get the diastereotopic protons are

  • coupling with each other, okay, big whoop.

  • You'll get that each one is coupling to one of the protons,

  • all right that gives you some new information,

  • but that's redundant.

  • If you have two diastereotopic protons coupled

  • to two diastereotopic protons, now you've got lots and lots

  • of data points that basically just tells you you have a CH2

  • next to a CH2.

  • So in order to help make sense of the data,

  • I got next to the HMQC, and I'm very, very rigorous about trying

  • to transcribe stuff, and I'm not super neat,

  • but I tend to really try to be analytical.

  • So I'm going to copy all of my numbers here to the carbon axis,

  • and I'll copy all of my letters to the proton axis.

  • And at this point, again, a grid is extremely useful,

  • if you're working on your own spectrometer you might want

  • to do an expansion, you might want to expand this region just

  • so you can get a close look and see what's lining up,

  • but if you're having trouble following with your eye,

  • and things aren't completely obvious, slapping a grid

  • on the spectrum is a very useful way, for example,

  • to see that this peak at nine here is actually crossing

  • with the singlet, so we have two methyl's

  • that are right next to each other.

  • One of those methyl's is a singlet;

  • one of them is a triplet, and so you can very nicely see

  • that 11 is crossing with I, and 10 is --

  • and nine is crossing with J, and then we can go

  • and 10 is crossing with H, I believe, and again I'm going

  • to cheat a little bit because -- 10 is crossing with G --

  • going to cheat a little bit because it's hard staring

  • in here, and it looks like seven is crossing with H,

  • and then F it looks like is crossing with eight, and,

  • let's see, six is crossing with D and E, so 6D and 6E,

  • and it looks like five is crossing

  • with B. C has no partner, and it looks like three is crossing

  • with A, and this information here,

  • really becomes my Rosetta Stone.

  • It really becomes the key piece of information that I'm going

  • to be using now in building the structure

  • because now that's going to give us all

  • of our easy connectivity's, and you need to keep your wits

  • about you about chemical shift as well.

  • So, you know, obviously if we're talking a carbonyl,

  • we're probably talking one is a carbonyl.

  • If we're talking about an alkene, we're probably talking

  • about two and three being the alkene, and it looks

  • like three is a quat carbon of an alkene and two is a CH2

  • of an alkene, so it looks like we have a gemdimetyl group here.

  • Four and five are interesting.

  • Remember the region your alkene --

  • your carbon protons track pretty well with your proton scale,

  • and if you're next to -- not so much on halogen or nitrogen,

  • those tend to be, sort of, if you're next to halogen

  • or nitrogen then those tend to be here, but if you're next

  • to an oxygen, then you usually tend to be somewhere around here

  • in the 50 to 90 range depending on whether it's an OCH3

  • at one extreme, or say a carbon that's a quat

  • with an alcohol at another extreme.

  • If you're down further than that it could be two oxygen's

  • on a carbon, or it could be an alkene,

  • or it could be a nitrile.

  • Okay, so it looks like we probably have a couple

  • of carbons with an oxygen attached to them.

  • Number five is a CH2, and number three, as I said, was a CH2,

  • four is a quat, two is a quat, one is a quat.

  • Quats and other things that are isolated are going

  • to be problems later on.

  • So if you look at this spectrum, we have 7H and 9J

  • that don't show -- that are close to singlets,

  • and we'll see 7H is going to come in.

  • We have C that has nothing on it and so we're going

  • to have have to deal with him.

  • Okay, now at this point I'm prepared to go to my COZ.

  • This particular COZ, the way they plotted it in the book

  • to save space or allow you to give bigger spectra.

  • They only plotted the axis on one edge and that's okay

  • because you can just bounce up and over and then up,

  • otherwise I'd just be bouncing up and up to that axis; however,

  • you want to do it is fine.

  • All right, so now as I said, I'm ready to attack my COZ,

  • and the first thing I'm going to do is, again,

  • very slavishly transcribe so I have 3A and 5B and C --

  • and you really don't want to make a mistake

  • at this point -- 6D, 6E, 8F, 10G.

  • The other nice thing in addition to having it

  • so that we all can discuss things together --

  • the other nice thing about taking this sort

  • of meticulous systematic approach to this and 9J here --

  • the other thing about taking this sort

  • of meticulous systematic approach is it means

  • that you can set down the problem, come back to it later,

  • and get your bearings a lot more quickly because it's not just,

  • oh we've got a lot of stuff, it's actually, oh,

  • I've got this resonance and I still don't know where it goes.

  • All right at this point we want to sort of build

  • up our fragments, and I'm going to look at the COZ.

  • You can use a grid, you can draw straight lines

  • on it, whatever you like.

  • If you want a grid you can do it this way.

  • If you're fancy and you like to work off the online problems,

  • in Acrobat the command U, if you're using a full version,

  • I'm not sure about the reader,

  • command U actually just slaps a grid right on the screen

  • which is useful, and you can even --

  • there are parameters in Acrobat to set how fine a grid,

  • but it's helpful with --

  • particularly with the book problems where they tend

  • to be less generous with the expansion.

  • So at this point, I tend to go through

  • and just list all of my cross peaks.

  • So if I'm working up --

  • I only need to work on one side of the diagonal.

  • It should be pretty symmetrical,

  • but if you're uncertain whether anything is noise, check if it's

  • on both sides of the diagonal.

  • If you're working on the spectrometer,

  • you can go down a level or up a level with the times 2

  • or divided by 2, or the slider, and you're going to get

  • down to a level where you have two types of things.

  • At the very bottom you'll just have a basement of noise,

  • particularly in data poor experiments,

  • but you'll also have artifact, baseline role.

  • Your phasing is very important in the 2D experiments in terms

  • of not getting a lot of crap off the baseline.

  • So you really want to take time

  • when you're phasing it to do a good job.

  • Okay, so we've got this peak 3A to 10G, and it looks

  • like we have something of 3A and 8F here.

  • I'll put a little question mark there,

  • I'm not completely sure what's going --

  • well of course I'm sure what's going on, but at this point

  • in analyzing the thing, I'm not sure.

  • Okay, this is kind of nice because you look here

  • and you say, All right, yes we've got 6E, 6F,

  • but I already know they're

  • on the same carbon, it's no big deal.

  • They're diastereotopic protons that are coupled to each other.

  • Okay, I don't need to stress about that.

  • All right, 8F cross 7H, and I think that about does it.

  • So at this point, I want to put together fragments,

  • and this is what I'm using that...

  • [ Inaudible ]

  • Oh, Oh. Here we go.

  • Yes, yes yes.

  • 5B, right.

  • [ Inaudible ]

  • Five B to 11I absolutely, 5B to 11I, and you notice

  • that you're using multiple sorts of tools in thinking

  • about things because on the one hand you're recognizing

  • when we just had the 1D data in front of us,

  • you were recognizing the match of patterns

  • and coupling constants, you were recognizing the 3 hydrogen

  • triplet up field and a 2 hydrogen quartet downfield,

  • midfield, probably went together as an ethyl ester group

  • because CH3 split into a triple, it has to be next to a CH2.

  • CH2 split into a quartet, remember it didn't have

  • to be a quartet, but CH2 split

  • into a quartet probably is next to a CH3.

  • It could have been next to a CH2 and a CH had the same J value,

  • so I don't know for sure, but now with this

  • and everything else, I think I can be pretty sure.

  • So let me sort of jot down what I think I have

  • at this point for my fragments.

  • So I think I have OC5H2B, C11, H3I, as one fragment and I

  • like to use that way of doing it where I put the number

  • on the carbon, the letter on the hydrogen,

  • so this just means carbon 5 is part

  • of the CH2 group with two protons.

  • B and C11 is part of a CH3 group with three protons I.

  • All right, what else do I have in my scorecard here?

  • Well that C8H2F cross peak with C7H2H gives me another fragment.

  • The other thing that I like to do in keeping score

  • at this point is I like to show my valences.

  • It helps my thinking to say,

  • Okay that means I have a valence here, this helps me think

  • about where my unfilled valences are.

  • All right, what else do I have in my scorecard?

  • I have an alkene and it's C3HAHA.

  • If I were thinking about it,

  • I might say maybe these are two distinct hydrogens here.

  • If I later went on and I said, Oh wait,

  • I thought they were one type of hydrogen, but they're two,

  • and this is important to my analysis, all I'd need to do

  • with this at this point, is say, All right we're going

  • to call one of them A and one of them A prime,

  • and the nice thing is you're not renumbering

  • or relettering your whole spectrum if you suddenly say,

  • Oh wait, this resonance is really two resonances.

  • If I decided that H was really two resonances, and of course H

  • and F really are two resonances because you have a stereo center

  • and they're methylene's,

  • and they're diastereotopic methylenes.

  • It's not like the COZ we saw

  • in the discussion section the other time where I was going

  • on where we were talking about highly differentiated,

  • highly ionized tropic CH2 groups,

  • but it's the same sort of deal.

  • So if it were important I could say, H and H prime,

  • F and F prime, if I really started

  • to see distinct cross peaks, but honestly I don't

  • so this is absolutely fine for the analysis.

  • Okay, so I have C3 and then C3 seems to be bound to C2

  • which is a quat, and we have this interesting situation here

  • where we see this nice cross peak off of 10 G, right.

  • Ten G is a methyl group.

  • Ten G is kind of at this position of about 1.7.

  • Now remember I said I like to keep some numbers in my head

  • and my sort of quick and dirty is a benzylic methyl is 2,

  • a methyl that's alphaed to a carbonyl is 2 ppm,

  • and a methyl that's allylic is about 2 ppm,

  • and then I said caveat --

  • if you really want to keep an extra number in your head,

  • keep 1.7 for that allylic methyl.

  • So this is very typical of an allylic methyl.

  • It's exactly what you'd expect for its position

  • and it's exactly the sort of thing

  • that you would expect for allylic coupling.

  • So C10, H3G comes here, and then this kind of makes sense

  • of the cross peaks, all right,

  • we're seeing this cross peak here,

  • we're seeing this little cross peak with eight,

  • so if you want to, we'll get it from the HMBC, if you don't want

  • to do it, but if you want to get it at this point,

  • it certainly makes a heck of a lot of sense

  • that 3A is crossing with eight.

  • So I can put this in, if you're uncertain about a connection,

  • put it in with a dashed line.

  • It's a great tool to remind yourself on your scorecard

  • on working out the problem if you're worried

  • or concerned about something.

  • So at this point, we need to figure out the rest

  • of our stuff, so let me continue with our scorecard.

  • We have a carbonyl and that's our C1.

  • I hope you can see this from --

  • yes you're just about on the edge of the screen here.

  • All right, so we have a carbonyl.

  • We have some other -- we have some other problems here.

  • We have our C6, HD, HE, and I'll keep filling in my valences

  • to be good about this just to remind us

  • that we have some issues of valences here,

  • and then I have some carbon and there may be redundancy here.

  • I have some carbon that's connected to C9, H3J,

  • and that carbon has to be a quat.

  • It has to be because we're isolating that methyl over here,

  • and I have some other carbon, remember I have this carbon 4

  • and that carbon 4 is pretty far downfield

  • in this C13 NMR spectrum.

  • It's just at about 70 parts per million, and that's got

  • to be a carbon next to an oxygen.

  • All right, so at this point that's kind of my thinking.

  • Now certainly by brute force you could now assemble these pieces.

  • You would basically start to try all different possibilities

  • and eventually you'd probably come

  • up with the right structure.

  • I like this molecule because it's a simple enough molecule

  • that could, but what I 'd

  • like to show you now is how HMBC really lends this --

  • makes this into a much more systematic, let us say, process.

  • All right so at this point, I'm going to pull

  • up the HMBC spectrum, and we get a lot of cross peaks.

  • You're textbook, as I've railed about,

  • has doctored its HMBC spectrum,

  • so I've literally undoctored the HMBC spectrum.

  • What the textbook did which I don't like is it's taken

  • out the HMQC type of cross peaks in the spectrum,

  • and there's no reason to do that.

  • You should be able to identify these.

  • You're going to see them in real data.

  • The HMBC, we've talked about this notion of delays.

  • We've talked about the idea that you're doing,

  • what's basically a series of pulses and delays,

  • where you're delays are optimized to different things

  • like coupling constants.

  • So when we talked about our depth spectra last time I said,

  • the problem with the depth spectrum is you're choosing --

  • you have to choose a J value for the depth spectrum.

  • You're going to choose a typical J value, and that's going

  • to give an optimum performance at that J value, and guess what,

  • if your J's aren't 145 hertz, if they're a little off --

  • 125 hertz, 160 hertz, you'll be fine,

  • but if they're a lot different you'll start

  • to see other things.

  • Now HMBC is optimized to small couplings.

  • Small couplings typically mean on the order of zero

  • to 20 hertz, and this spectrum downstairs is sort of centered

  • at 10 which pretty much catches it all,

  • but that doesn't mean your one bond couplings

  • that are 125 hertz may not sometimes come in,

  • and so you can see your one bond couplings.

  • The pulse sequence -- remember in the depth how we turned

  • on the proton decoupler in the final acquisition?

  • In a typical HMBC, you're not turning on the proton decoupler

  • in the final part of the acquisition

  • which means you're seeing your CH couplings.

  • Now most of those are two bond couplings, so most of those are

  • on the order of two and three bond, so most of them are

  • on the order of 10 hertz which means,

  • okay when you're seeing something

  • where your peak's a little bit wide,

  • the peak's a little bit wide because you're seeing

  • that coupling, but when you're picking up the one bond coupling

  • which is not what the experiment is supposed to pick up,

  • it is extremely obvious.

  • You get these sort of vampire bites around the peak,

  • and so I just put a cross through each of them

  • to help remind me of what's going on, right.

  • So this peak number 11, and this is 11 over here is 11I.

  • So those two vampire bites there are the one bond coupling,

  • it's trivial.

  • It's the information that's already in your HMQC spectrum,

  • but it's confusing in this data rich experiment.

  • So let me go through and now systematically number 10, 9,

  • 8, 7, 6, 5, 4, 3, 2, 1.

  • I'll systematically number my carbon axis.

  • I'll once again slavishly write my labels on the proton axis;

  • 3A, 5B, C, 6D, 6E, 8F, 10G, 7H, and I already did 11I, and 9J.

  • And you can pretty much see all of your, sort of,

  • vampire bites here, they're happen

  • to be six pairs of them here.

  • So we're getting one around five, that's your HMQC pattern.

  • We're getting one around seven, that's your HMQC pattern.

  • We're getting one around six, and we're getting, let's see,

  • one around 10, and one around nine.

  • All right, even without these types of information,

  • you're still extremely data rich

  • and the question becomes where to begin.

  • Now if you're a computer, you just go ahead

  • and suck it all the data and fit the pieces together that way,

  • but as a person you've got the tremendous strength

  • that we've already seen of pattern recognition.

  • We saw, we can read that methoxy group in the ester.

  • We can read the diastereotopic methylene, and you were seeing

  • that from this whole host of little things

  • with the diastereotopic methylene.

  • From the big J value, from the peaks tenting into each other,

  • it's the same way most of you were able

  • to tackle those coupling problems on the midterm exam,

  • and just read and say, Okay this is this nitrobenzene,

  • this is that nitrobenzene, this is this methylpyridine,

  • because you starting to recognize the magnitude

  • of the coupling, the tenting of the peaks, and so forth.

  • So you've got some tremendous advantages and

  • yet we've also got this ability to, or this issue

  • of how do we avoid confusion here?

  • So usually what I like to do are to start with my problems,

  • and in general, my problems are going to be the isolated peaks.

  • In general, it is the peaks that are isolated that are going

  • to be both the tough ones to put together,

  • like 39HJ because we don't know where it fits, it's not coupling

  • into anything, but they're also going to be the sources

  • of tremendous strength because those isolated ones are then

  • going to link to the other isolated parts.

  • So let's start with the carbonyl.

  • The carbonyl is 5B to 6 to 1, and 6D and 6E to 1,

  • and that's very, very useful.

  • The -- so remember HMBC can pick up two and three bond coupling,

  • and the problem is you don't necessarily know which is which.

  • That's the really tough thing with this technique.

  • Later on we'll talk about inadequate

  • which is a very powerful technique,

  • it's like a carbon-carbon COZ, but not a very useful technique

  • because of the low natural abundance of C13.

  • It's very, very atypical to have two C13's next to each other

  • in a molecule, but that's incredibly powerful

  • because it means you can assemble your whole carbon

  • skeleton like a COZ process, but the problem

  • with HMBC is you've got both two and three

  • so you're always second guessing yourself.

  • So whenever you can avoid second guessing,

  • it's a tremendous breath of fresh air.

  • So here, the 5 B to carbon1 is very nice

  • because that provides a linkage there.

  • We kind of, sort of knew this was an ethyl ester,

  • but this tells us because there's the three bond coupling

  • is going through there so we can't go any further,

  • there can't be an intervening atom.

  • This six is less clear because it could be directly connected,

  • but at this point I can't know.

  • There could be an intervening atom, but still,

  • we know that the six is isolated.

  • We know that D and E are isolated, they're not J coupled

  • to anything else, but I don't know

  • about this bond here at this point.

  • So at this point, I might write a big question mark here.

  • All right, I'm not going to go add [inaudible]

  • through everything because a lot of the information is redundant.

  • So, for example, here we're seeing

  • that two is crossing with seven.

  • So this is 8F cross 2, 10, G cross 2, and 7H to 2,

  • and in a way you could say all of that is redundant

  • because I've already replaced --

  • I've already placed groups on here, and so you're two,

  • you notice, and this is a perfect example,

  • if I weren't already sure of this or pretty sure

  • by allylic coupling, I wouldn't necessarily know

  • since two is crossing with both 7H and 8F.

  • I wouldn't necessarily know which end this is going

  • because it's two and three bond couplings

  • so it could couple either way.

  • So the only thing that's really told me this,

  • and I think by this point I can go ahead

  • and turn this into a solid line.

  • The only thing that really told me that was the COZ,

  • but fortunately we'll get enough other things because we're going

  • to see in just a moment what attaches over here to seven.

  • All right, so let's focus --

  • let's continue to focus on our isolated peaks.

  • So if we look at four and we go with four, we have 9J to 4.

  • We have 7H to 4.

  • We have 6D and E and maybe the better way to do it is 6D/E

  • to 4, and we have C to 4.

  • Now, all right, we have four and we're pretty sure,

  • at this point we're pretty sure we have an alcohol.

  • We're pretty sure that C is the alcohol.

  • It's isolated.

  • I think at this point we really can say, All right,

  • here's our 8C, we're on 4.

  • Now 4 is going to be a very, very important lynch pin,

  • and I guess the thing that's confounding to me

  • at this point is the fact that we've got 9J to 4,

  • but that's not necessarily saying

  • that that isolated methyl is directly attached to four.

  • We're running out of atoms, so we're going

  • to be good in a second.

  • We have seven to four.

  • We have 6D and E to 4.

  • They're probably all attached, but watch what happens

  • if I now pick up on another isolated one.

  • So I probably can start to infer things, but let's continue

  • with another one of our problem children,

  • another one of our isolated ones.

  • So let's go off of C. We wouldn't be seeing cross peaks

  • off of C if it were exchanging rapidly; if the alcohol

  • on C were not residing on that proton, on that oxygen for,

  • you know, several hundredths or tenths of a second,

  • if it were exchanging rapidly.

  • Usually the less [inaudible] alcohol,

  • the more rapidly it exchanges.

  • So usually a primary alcohol exchanges rapidly.

  • Usually sometimes a secondary is slow, sometimes it's fast.

  • Usually a tertiary tends to be slower,

  • just more [inaudible] harder for a molecule water

  • to get in to make exchange.

  • D is [inaudible] chloroform, passive illumina,

  • not your sample, but just your chloroform

  • through flame or stride.

  • Illumina is a good way to reduce exchange

  • because you're getting rid of acid in the sample,

  • but here we happen to see beautiful,

  • beautiful coupling off of C, and so if you look

  • at your cross peaks here, and again we're going to use things

  • in a focused way, we have C9, C7, C6, and so you look at all

  • of these cross peaks and that, that really is nice

  • because remember you're going to be picking up your two

  • and three bond coupling.

  • Unless you have any intervening coupling through a double bond

  • where sometimes you can pick up four bond coupling --

  • remember sometimes

  • like acetylene we saw how weird the acetylene behaved.

  • I mentioned that a two bond is a 50 hertz coupling

  • so you can get homophillic coupling,

  • but here this is pretty nice.

  • We've already taken care of two of our bonds,

  • so look how valuable this is as a lynch pin.

  • Every cross peak now we get is going

  • to help give us our connectivity.

  • So we have C4, that's going to connect over to C6

  • because we're getting that cross peak here.

  • So we know that this is three bond.

  • That's as far as we can go.

  • We're really lucky at this point.

  • Now we get this cross peak over to seven, and so again,

  • that's just sewing this whole molecule together.

  • We have this cross peak to nine and we said already here,

  • remember we had this fragment, we weren't able to place it,

  • but it could be redundant

  • because we were running out of carbons.

  • We have this cross peak over to nine and so there's our C9H3J,

  • and now this whole molecule is sewn up.

  • So if you look at our structure right now,

  • I'll just redraw this,

  • and I guess I'll draw it real small up here.

  • So here's, here's the whole structure of our molecule.

  • We have our seven and eight over here, our six here,

  • our ethyl group, our isolated methyl, our isolated hydroxy,

  • and this set of cross peaks here has really been key.

  • Now the good news is there are other isolated points

  • in this molecule that can put things together.

  • So when I try to attack a problem I'm going to start

  • with the isolated ones.

  • Obviously, eventually you want to go back and sort

  • of check yourself and see that everything is consistent,

  • but let's take another point of attack here.

  • So let me just run down this track of 9J and see

  • who is 9J is crossing with.

  • So 9J is crossing with seven.

  • 9J is crossing with 6 and 9J is crossing with four,

  • and so you look at that and you say, Oh, okay.

  • That's giving me the same information.

  • See the HMBC is really screaming out at me

  • through the isolated ones.

  • It was a gift that we got HC.

  • HC might not have coupled, it's an alcohol.

  • HC might have been exchanging rapidly

  • if there was some acid in our sample.

  • It was a gift that we got,

  • and it just gave us the whole problem,

  • but we get that same gift right off of carbon nine because nine

  • with J is giving us seven, so we're crossing over to here,

  • and again, remember, your hydrogen you have one bond

  • from hydrogen J to carbon, one bond from carbon nine

  • to carbon four, and so any other cross peak now has

  • to be attached directly to carbon four.

  • So we see a cross to seven.

  • We see a cross to six, and we see a cross

  • to four that's our two bond coupling.

  • So that's giving us the information.

  • I'll take one more isolated carbon just

  • for the, for the heck of it.

  • It's not really completely isolated, but it's 10G,

  • and so if we go off of 10G, let's see, we have here 10G

  • with three, and 10G with eight over there, and so if you look

  • at that, that's also giving us some information.

  • We have the 10G to three

  • by allylic coupling by the proton NMR.

  • So that information was nothing new,

  • but you don't get allylic coupling right through here,

  • so this information here, 10G to eight, is actually useful.

  • Had we not been able to place--

  • had we not been able to place eight directly on two.

  • Had we not picked up that allylic coupling,

  • or had things been more complicated or confusing,

  • or had we only at that point had this HMBC cross peak between two

  • and seven and eight -- remember how I said two is crossing

  • with both -- is crossing with both HF and HH,

  • and we couldn't be sure about that.

  • If I wasn't certain at that point, then we could've gotten

  • that later on for this cross peak.

  • So there's multiple pieces

  • of evidence all pointing in this direction.

  • Anyway this is how I view HMBC as being incredibly powerful

  • for putting pieces together.

  • I want to show you a couple of last things that are sort

  • of common, common features that are kind of cool.

  • There also pertain to some of the upcoming homework,

  • so it's worth actually keeping in mind.

  • One thing that's very cool is, okay,

  • if you have, 2CH3's on a methyl.

  • So remember how I said you can get these vampire bites,

  • you can get your one bond couplings, but if you're ahead

  • and if you have no stereo center, in other words,

  • if these methyl's are either not diastereotopic

  • or they're coincident, then your HMBC,

  • even if you see these vampire type bite type

  • of cross peaks here -- even if you see --

  • so here's methyl and here's your methyl in the C13,

  • here's your methyl in the H1.

  • Even if you see those types of cross peaks,

  • this is a real HMBC cross peak here

  • because the two methyl's are crossing with each other.

  • So that's kind of cool.

  • [ Inaudible ]

  • Well in this particular cartoon example,

  • they're magnetically equivalent.

  • If they were magnetically in equivalent,

  • if they were diastereotopic, then you'd still see HMBC peaks.

  • By the way, the tough thing

  • about HMBC is you're not guaranteed to get a cross peak

  • because your -- particularly on three bond.

  • So two bond is weird because your two bond J's end

  • up being all over the map,

  • though usually they show up, but not always.

  • Three bond is weird in a different way.

  • It's weird by dihedral angle, by a carpolus relationship.

  • So if your two is your hydrogen,

  • so if you have a dihedral angle that's defined as HCCBC,

  • like so, if you have good overlap between this hydrogen

  • and this carbon, a good geometrical overlap--

  • meaning antiperiplanar or a sinperiplanar relationship,

  • you typically get a big J. It shows up in the HMBC,

  • but if these two are at close to 90 degree angles,

  • you're not going to get a cross peak typically,

  • and so that's the third thing

  • about HMBC that's really confusing.

  • The beauty of methyl groups is, with a methyl group,

  • no matter what, you're always going to have

  • at least you're always going to have protons

  • at a good dihedral angle.

  • So methyl groups, isolated, well methyl groups in general,

  • end up being extremely valuable for HMBC, but we also see here

  • that the isolated methyl groups are usually the problem children

  • because you don't know where to put them,

  • and fortunately they are talkative problem children

  • because they will talk to you in the HMBC.

  • So that's a very useful one.

  • A couple of other things, just to keep in mind, carbonyls --

  • if you've got like this, if you've got something

  • like this whatever, you know, the problem is you don't know

  • if it's two bond coupling or three bond coupling,

  • but if you can build up your pieces and say, Oh well,

  • I've got both of them, then you can figure out all right,

  • that carbonyls attached to one and the other.

  • Let's see, I guess, I don't know if this comes up --

  • we already saw an ester.

  • Some people have said to me, Oh, I didn't know

  • that you could get coupling through heteroatoms, but yes,

  • coupling occurs through carbon oxygen bonds,

  • through carbon carbon bonds, through carbon nitrogen bonds.

  • So for example, in an amid here, like so,

  • again your carbonyl can be a real lynch pin.

  • You can get all different protons coupling

  • with that carbonyl so they can end up telling you lots and lots

  • of information from putting the pieces together. ------------------------------ecb729c619a1--

>> Yes, so as you may have noticed this is

Subtitles and vocabulary

Click the word to look it up Click the word to find further inforamtion about it